PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G085700.1
Common NamePHAVU_008G085700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 171aa    MW: 19405.9 Da    PI: 9.7247
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G085700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.4e-08102146448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         WT+ E+ l++ + +    g+Wk I+++    +t+ q+ s+ qky+
  Phvul.008G085700.1 102 WTENEHRLFIIGLQNCSWGDWKNISKYYIPSKTPTQIASHAQKYR 146
                         **************************9988**************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.55894150IPR017930Myb domain
SuperFamilySSF466895.93E-1596150IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1397149IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.6E-6101145IPR009057Homeodomain-like
PfamPF002494.6E-6101146IPR001005SANT/Myb domain
CDDcd001677.53E-6102145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
VCVGASRVSI LNVSPYQSTP FKDNGEPAFK FPTPTIQPIS PDVFCYKNAH TPSEVFATHV  60
SAISPNTIIS EHVPSGWVQM PNYSNHSTPP VLKSHHKQYE HWTENEHRLF IIGLQNCSWG  120
DWKNISKYYI PSKTPTQIAS HAQKYRHHQN GLKKNKKRKS IHDISFDDTK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140121.11e-125hypothetical protein PHAVU_008G085700g, partial
TrEMBLV7B3H41e-125V7B3H4_PHAVU; Uncharacterized protein (Fragment)
STRINGscaffold_600421.11e-21(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1852625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-23MYB family protein